HL_6RTI_001
3D structure
- PDB id
- 6RTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with aptamer A9g
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- (CFZ)(CFZ)(UFT)GA(CFZ)(UFT)(UFT)(CFZ)(UFT)A(UFT)A(CFZ)(UFT)AAG
- Length
- 18 nucleotides
- Bulged bases
- 6RTI|1|X|CFZ|20
- QA status
- Modified nucleotides: CFZ, UFT
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14757.1
- Basepair signature
- cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
- Number of instances in this motif group
- 1
Unit IDs
6RTI|1|X|CFZ|15
6RTI|1|X|CFZ|16
6RTI|1|X|UFT|17
6RTI|1|X|G|18
6RTI|1|X|A|19
6RTI|1|X|CFZ|20
6RTI|1|X|UFT|21
6RTI|1|X|UFT|22
6RTI|1|X|CFZ|23
6RTI|1|X|UFT|24
6RTI|1|X|A|25
6RTI|1|X|UFT|26
6RTI|1|X|A|27
6RTI|1|X|CFZ|28
6RTI|1|X|UFT|29
6RTI|1|X|A|30
6RTI|1|X|A|31
6RTI|1|X|G|32
Current chains
- Chain X
- Aptamer A9g, RNA (43-MER)
Nearby chains
- Chain A
- Glutamate carboxypeptidase 2
Coloring options: