HL_6RW4_010

3D structure

PDB id

6RW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RW4_010 not in the Motif Atlas

Geometric match to HL_6SVS_001

Geometric discrepancy: 0.1126

The information below is about HL_6SVS_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6RW4|1|A|C|1023
6RW4|1|A|G|1024
6RW4|1|A|A|1025
6RW4|1|A|A|1026
6RW4|1|A|A|1027
6RW4|1|A|G|1028

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain L

28S ribosomal protein S15, mitochondrial

Chain Q

28S ribosomal protein S21, mitochondrial