HL_6RXU_003

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_003 not in the Motif Atlas

Geometric match to HL_4V9F_070

Geometric discrepancy: 0.212

The information below is about HL_4V9F_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6RXU|1|C1|G|102
6RXU|1|C1|G|103
6RXU|1|C1|U|104
6RXU|1|C1|A|105
6RXU|1|C1|A|106
6RXU|1|C1|C|107

Current chains

Chain C1

35S rRNA

Nearby chains

Chain UE

Utp5

Chain UO

Utp15

Chain US

Noc4