HL_6RXU_008

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUGCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_008 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2461

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6RXU|1|C1|C|380
6RXU|1|C1|G|381
6RXU|1|C1|U|382
6RXU|1|C1|G|383
6RXU|1|C1|C|384
6RXU|1|C1|A|385
6RXU|1|C1|G|386

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CB

Nop1

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UZ

Utp30