HL_6RXU_009

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCACCG

Length

7 nucleotides

Bulged bases

6RXU|1|C1|C|465, 6RXU|1|C1|A|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_009 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1586

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6RXU|1|C1|C|463
6RXU|1|C1|G|464
6RXU|1|C1|C|465
6RXU|1|C1|A|466
6RXU|1|C1|C|467
6RXU|1|C1|C|468
6RXU|1|C1|G|469

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CM

Sof1

Chain CY

U3 small nucleolar ribonucleoprotein protein lcp5-like protein

Chain UT

Utp20