HL_6RXU_011

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAUUAUACAG

Length

11 nucleotides

Bulged bases

6RXU|1|C1|U|661, 6RXU|1|C1|A|662, 6RXU|1|C1|U|663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_011 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1673

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6RXU|1|C1|C|657
6RXU|1|C1|A|658
6RXU|1|C1|A|659
6RXU|1|C1|U|660
6RXU|1|C1|U|661
6RXU|1|C1|A|662
6RXU|1|C1|U|663
6RXU|1|C1|A|664
6RXU|1|C1|C|665
6RXU|1|C1|A|666
6RXU|1|C1|G|667

Current chains

Chain C1

35S rRNA

Nearby chains

Chain Cd

40S ribosomal protein S6

Chain UT

Utp20