HL_6RXU_019

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAGAAACG

Length

10 nucleotides

Bulged bases

6RXU|1|C1|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RXU|1|C1|C|978
6RXU|1|C1|U|979
6RXU|1|C1|G|980
6RXU|1|C1|A|981
6RXU|1|C1|G|982
6RXU|1|C1|A|983
6RXU|1|C1|A|984
6RXU|1|C1|A|985
6RXU|1|C1|C|986
6RXU|1|C1|G|987

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CW

Ribosome biogenesis protein ENP2

Chain Cd

40S ribosomal protein S6

Chain Cf

40S ribosomal protein S8