HL_6RXU_021

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

6RXU|1|C1|A|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_021 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1619

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6RXU|1|C1|C|1034
6RXU|1|C1|G|1035
6RXU|1|C1|A|1036
6RXU|1|C1|C|1037
6RXU|1|C1|A|1038
6RXU|1|C1|C|1039
6RXU|1|C1|G|1040

Current chains

Chain C1

35S rRNA

Nearby chains

Chain Cb

40S ribosomal protein S4

Chain Co

40S ribosomal protein S24

Chain UT

Utp20