HL_6RXU_030

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6RXU|1|C1|U|2178, 6RXU|1|C1|C|2179, 6RXU|1|C1|G|2184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RXU_030 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.205

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6RXU|1|C1|G|2177
6RXU|1|C1|U|2178
6RXU|1|C1|C|2179
6RXU|1|C1|A|2180
6RXU|1|C1|U|2181
6RXU|1|C1|C|2182
6RXU|1|C1|A|2183
6RXU|1|C1|G|2184
6RXU|1|C1|C|2185

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain CK

Putative U3 small nucleolar ribonucleoprotein

Chain CL

Putative U3 small nucleolar ribonucleoprotein protein

Chain UB

Utp2