HL_6RZZ_012

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGCCUCGGUAAG

Length

14 nucleotides

Bulged bases

6RZZ|1|A|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_012 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.3623

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RZZ|1|A|C|539
6RZZ|1|A|U|540
6RZZ|1|A|U|541
6RZZ|1|A|G|542
6RZZ|1|A|C|543
6RZZ|1|A|C|544
6RZZ|1|A|U|545
6RZZ|1|A|C|546
6RZZ|1|A|G|547
6RZZ|1|A|G|548
6RZZ|1|A|U|549
6RZZ|1|A|A|550
6RZZ|1|A|A|551
6RZZ|1|A|G|552

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L20-A