HL_6RZZ_027

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6RZZ|1|A|A|1244, 6RZZ|1|A|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_027 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3234

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6RZZ|1|A|C|1239
6RZZ|1|A|A|1240
6RZZ|1|A|U|1241
6RZZ|1|A|G|1242
6RZZ|1|A|G|1243
6RZZ|1|A|A|1244
6RZZ|1|A|A|1245
6RZZ|1|A|G|1246
6RZZ|1|A|U|1247
6RZZ|1|A|C|1248
6RZZ|1|A|G|1249

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain s

Tyrosine-protein phosphatase YVH1