HL_6RZZ_057

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_057 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1085

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6RZZ|1|A|C|2693
6RZZ|1|A|A|2694
6RZZ|1|A|A|2695
6RZZ|1|A|A|2696
6RZZ|1|A|A|2697
6RZZ|1|A|G|2698
6RZZ|1|A|G|2699
6RZZ|1|A|G|2700

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A