HL_6RZZ_067

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6RZZ|1|A|G|3116, 6RZZ|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0875

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6RZZ|1|A|C|3110
6RZZ|1|A|U|3111
6RZZ|1|A|G|3112
6RZZ|1|A|A|3113
6RZZ|1|A|A|3114
6RZZ|1|A|C|3115
6RZZ|1|A|G|3116
6RZZ|1|A|C|3117
6RZZ|1|A|C|3118
6RZZ|1|A|U|3119
6RZZ|1|A|C|3120
6RZZ|1|A|U|3121
6RZZ|1|A|A|3122
6RZZ|1|A|A|3123
6RZZ|1|A|G|3124

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B