HL_6RZZ_080

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6RZZ|1|A|U|3195, 6RZZ|1|A|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RZZ_080 not in the Motif Atlas

Homologous match to HL_8P9A_179

Geometric discrepancy: 0.5255

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6RZZ|1|A|C|3193
6RZZ|1|A|C|3194
6RZZ|1|A|U|3195
6RZZ|1|A|U|3196
6RZZ|1|A|G|3197
6RZZ|1|A|U|3198
6RZZ|1|A|G|3199

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain M

60S ribosomal protein L14-A