HL_6S0K_020

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

6S0K|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0K_020 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.3477

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6S0K|1|A|U|641
6S0K|1|A|U|642
6S0K|1|A|A|643
6S0K|1|A|A|644
6S0K|1|A|C|645
6S0K|1|A|U|646
6S0K|1|A|G|647

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35