3D structure

PDB id
6S0K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome nascent chain in complex with SecA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUUAAUC
Length
7 nucleotides
Bulged bases
6S0K|1|A|U|1325, 6S0K|1|A|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6S0K_032 not in the Motif Atlas
Homologous match to HL_5J7L_166
Geometric discrepancy: 0.1277
The information below is about HL_5J7L_166
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6S0K|1|A|G|1324
6S0K|1|A|U|1325
6S0K|1|A|U|1326
6S0K|1|A|A|1327
6S0K|1|A|A|1328
6S0K|1|A|U|1329
6S0K|1|A|C|1330

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L17
Chain T
50S ribosomal protein L22

Coloring options:


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