HL_6S0K_052

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6S0K|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0K_052 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.1153

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0K|1|A|C|2248
6S0K|1|A|U|2249
6S0K|1|A|G|2250
6S0K|1|A|G|2251
6S0K|1|A|G|2252
6S0K|1|A|G|2253
6S0K|1|A|C|2254
6S0K|1|A|G|2255
6S0K|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

tRNA-CCA

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27