HL_6S0Z_048

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6S0Z|1|A|A|2057, 6S0Z|1|A|A|2058, 6S0Z|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0Z_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0937

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

6S0Z|1|A|G|2054
6S0Z|1|A|U|2055
6S0Z|1|A|G|2056
6S0Z|1|A|A|2057
6S0Z|1|A|A|2058
6S0Z|1|A|G|2059
6S0Z|1|A|A|2060
6S0Z|1|A|U|2061
6S0Z|1|A|G|2062
6S0Z|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain P

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32