HL_6S0Z_058

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0Z_058 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2325

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6S0Z|1|A|A|2498
6S0Z|1|A|G|2499
6S0Z|1|A|U|2500
6S0Z|1|A|U|2501
6S0Z|1|A|C|2502
6S0Z|1|A|A|2503
6S0Z|1|A|C|2504
6S0Z|1|A|A|2505
6S0Z|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36