HL_6S47_005

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6S47|1|AA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0828

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6S47|1|AA|U|194
6S47|1|AA|U|195
6S47|1|AA|G|196
6S47|1|AA|G|197
6S47|1|AA|A|198
6S47|1|AA|A|199
6S47|1|AA|C|200
6S47|1|AA|A|201

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4-A

Chain Aa

60S ribosomal protein L26-A

Chain Ag

60S ribosomal protein L32