HL_6S47_016

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0525

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6S47|1|AA|U|707
6S47|1|AA|G|708
6S47|1|AA|A|709
6S47|1|AA|A|710
6S47|1|AA|A|711
6S47|1|AA|G|712

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L13-A

Chain AS

60S ribosomal protein L18-A

Chain Ac

60S ribosomal protein L28

Chain Ak

60S ribosomal protein L36-A