HL_6S47_023

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6S47|1|AA|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_023 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1236

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6S47|1|AA|C|1023
6S47|1|AA|G|1024
6S47|1|AA|A|1025
6S47|1|AA|A|1026
6S47|1|AA|A|1027
6S47|1|AA|U|1028
6S47|1|AA|G|1029

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L11-B

Chain BQ

40S ribosomal protein S15

Chain BT

40S ribosomal protein S18-A