HL_6S47_031

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_031 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.0795

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6S47|1|AA|A|1462
6S47|1|AA|U|1463
6S47|1|AA|G|1464
6S47|1|AA|A|1465
6S47|1|AA|G|1466
6S47|1|AA|A|1467
6S47|1|AA|A|1468
6S47|1|AA|C|1469
6S47|1|AA|U|1470

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L17-A

Chain AT

60S ribosomal protein L19-A

Chain Af

60S ribosomal protein L31-A