HL_6S47_035

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6S47|1|AA|U|1606, 6S47|1|AA|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.084

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|G|1599
6S47|1|AA|U|1600
6S47|1|AA|U|1601
6S47|1|AA|A|1602
6S47|1|AA|A|1603
6S47|1|AA|G|1604
6S47|1|AA|A|1605
6S47|1|AA|U|1606
6S47|1|AA|U|1607
6S47|1|AA|C|1608

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19-A

Chain AZ

60S ribosomal protein L25

Chain Ai

60S ribosomal protein L34-A