HL_6S47_036

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_036 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.0794

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6S47|1|AA|G|1634
6S47|1|AA|G|1635
6S47|1|AA|U|1636
6S47|1|AA|A|1637
6S47|1|AA|A|1638
6S47|1|AA|C|1639

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein L27-A

Chain Ai

60S ribosomal protein L34-A