HL_6S47_037

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6S47|1|AA|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1135

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|G|1680
6S47|1|AA|U|1681
6S47|1|AA|U|1682
6S47|1|AA|A|1683
6S47|1|AA|U|1684
6S47|1|AA|C|1685
6S47|1|AA|U|1686
6S47|1|AA|U|1687
6S47|1|AA|U|1688

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19-A

Chain AW

60S ribosomal protein L22-A