HL_6S47_051

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6S47|1|AA|A|2372, 6S47|1|AA|A|2373, 6S47|1|AA|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0586

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|G|2369
6S47|1|AA|G|2370
6S47|1|AA|G|2371
6S47|1|AA|A|2372
6S47|1|AA|A|2373
6S47|1|AA|C|2374
6S47|1|AA|G|2375
6S47|1|AA|G|2376
6S47|1|AA|G|2377
6S47|1|AA|C|2378

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain Ag

60S ribosomal protein L32