HL_6S47_053

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

6S47|1|AA|C|2539, 6S47|1|AA|A|2540, 6S47|1|AA|U|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|G|2534
6S47|1|AA|A|2535
6S47|1|AA|A|2536
6S47|1|AA|U|2537
6S47|1|AA|U|2538
6S47|1|AA|C|2539
6S47|1|AA|A|2540
6S47|1|AA|U|2541
6S47|1|AA|U|2542
6S47|1|AA|U|2543
6S47|1|AA|U|2544
6S47|1|AA|C|2545

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L34-A

Chain BC

40S ribosomal protein S1-A