HL_6S47_055

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6S47|1|AA|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1019

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6S47|1|AA|C|2616
6S47|1|AA|U|2617
6S47|1|AA|G|2618
6S47|1|AA|G|2619
6S47|1|AA|G|2620
6S47|1|AA|G|2621
6S47|1|AA|C|2622
6S47|1|AA|G|2623
6S47|1|AA|G|2624

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L10

Chain Ad

60S ribosomal protein L29