HL_6S47_057

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2148

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6S47|1|AA|A|2673
6S47|1|AA|A|2674
6S47|1|AA|C|2675
6S47|1|AA|A|2676
6S47|1|AA|G|2677
6S47|1|AA|A|2678
6S47|1|AA|A|2679
6S47|1|AA|A|2680
6S47|1|AA|U|2681

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L11-B