HL_6S47_058

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_058 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0878

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6S47|1|AA|C|2693
6S47|1|AA|A|2694
6S47|1|AA|A|2695
6S47|1|AA|A|2696
6S47|1|AA|A|2697
6S47|1|AA|G|2698
6S47|1|AA|G|2699
6S47|1|AA|G|2700

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L10

Chain AV

60S ribosomal protein L21-A

Chain Aq

60S ribosomal protein L42-A