HL_6S47_064

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_064 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1045

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6S47|1|AA|U|2920
6S47|1|AA|U|2921
6S47|1|AA|G|2922
6S47|1|AA|U|2923
6S47|1|AA|U|2924
6S47|1|AA|C|2925
6S47|1|AA|A|2926

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3