HL_6S47_068

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6S47|1|AA|G|3116, 6S47|1|AA|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0657

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|C|3110
6S47|1|AA|U|3111
6S47|1|AA|G|3112
6S47|1|AA|A|3113
6S47|1|AA|A|3114
6S47|1|AA|C|3115
6S47|1|AA|G|3116
6S47|1|AA|C|3117
6S47|1|AA|C|3118
6S47|1|AA|U|3119
6S47|1|AA|C|3120
6S47|1|AA|U|3121
6S47|1|AA|A|3122
6S47|1|AA|A|3123
6S47|1|AA|G|3124

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L9-A

Chain AQ

60S ribosomal protein L16-A

Chain Ao

Ubiquitin-60S ribosomal protein L40