HL_6S47_071

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6S47|1|AA|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0721

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6S47|1|AA|G|3303
6S47|1|AA|U|3304
6S47|1|AA|A|3305
6S47|1|AA|U|3306
6S47|1|AA|A|3307
6S47|1|AA|C|3308
6S47|1|AA|G|3309
6S47|1|AA|A|3310
6S47|1|AA|C|3311

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AR

60S ribosomal protein L17-A