HL_6S47_073
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGUCCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_073 not in the Motif Atlas
- Geometric match to HL_5TBW_185
- Geometric discrepancy: 0.121
- The information below is about HL_5TBW_185
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_83767.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
6S47|1|AB|C|36
6S47|1|AB|G|37
6S47|1|AB|U|38
6S47|1|AB|C|39
6S47|1|AB|C|40
6S47|1|AB|G|41
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 60S ribosomal protein L5
- Chain AM
- 60S ribosomal protein L11-B
- Chain Bi
- [NU+] prion formation protein 1
Coloring options: