HL_6S47_077

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6S47|1|AC|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_077 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1031

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6S47|1|AC|G|124
6S47|1|AC|U|125
6S47|1|AC|A|126
6S47|1|AC|U|127
6S47|1|AC|U|128
6S47|1|AC|C|129

Current chains

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

60S ribosomal protein L25