HL_6S47_078
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_078 not in the Motif Atlas
- Homologous match to HL_4V88_186
- Geometric discrepancy: 0.1056
- The information below is about HL_4V88_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6S47|1|BA|G|7
6S47|1|BA|U|8
6S47|1|BA|U|9
6S47|1|BA|G|10
6S47|1|BA|A|11
6S47|1|BA|U|12
6S47|1|BA|C|13
6S47|1|BA|C|14
6S47|1|BA|U|15
6S47|1|BA|G|16
6S47|1|BA|C|17
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain BD
- 40S ribosomal protein S2
- Chain BY
- 40S ribosomal protein S23-A
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