HL_6S47_088

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6S47|1|BA|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_088 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1197

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6S47|1|BA|C|414
6S47|1|BA|C|415
6S47|1|BA|A|416
6S47|1|BA|A|417
6S47|1|BA|G|418
6S47|1|BA|G|419

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain AX

60S ribosomal protein L23-A

Chain BH

40S ribosomal protein S6-A