HL_6S47_091

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_091 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1042

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|A|520
6S47|1|BA|A|521
6S47|1|BA|U|522
6S47|1|BA|G|523
6S47|1|BA|U|524
6S47|1|BA|A|525
6S47|1|BA|A|526
6S47|1|BA|A|527
6S47|1|BA|U|528
6S47|1|BA|A|529
6S47|1|BA|C|530
6S47|1|BA|C|531
6S47|1|BA|U|532

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BK

40S ribosomal protein S9-A

Chain BZ

40S ribosomal protein S24-A