HL_6S47_094

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

6S47|1|BA|U|779, 6S47|1|BA|U|781, 6S47|1|BA|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_094 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3608

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|C|777
6S47|1|BA|G|778
6S47|1|BA|U|779
6S47|1|BA|A|780
6S47|1|BA|U|781
6S47|1|BA|U|782
6S47|1|BA|G|783

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BZ

40S ribosomal protein S24-A