HL_6S47_099

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_099 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2315

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6S47|1|BA|U|1055
6S47|1|BA|U|1056
6S47|1|BA|U|1057
6S47|1|BA|U|1058
6S47|1|BA|U|1059
6S47|1|BA|U|1060
6S47|1|BA|A|1061
6S47|1|BA|A|1062
6S47|1|BA|U|1063
6S47|1|BA|G|1064

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BC

40S ribosomal protein S1-A

Chain Bc

40S ribosomal protein S27-A