HL_6S47_107

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_107 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3148

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6S47|1|BA|U|1396
6S47|1|BA|U|1397
6S47|1|BA|U|1398
6S47|1|BA|C|1399
6S47|1|BA|A|1400
6S47|1|BA|A|1401
6S47|1|BA|G|1402

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BS

40S ribosomal protein S17-A