HL_6S47_110

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6S47|1|BA|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_110 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.1269

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6S47|1|BA|G|1594
6S47|1|BA|U|1595
6S47|1|BA|C|1596
6S47|1|BA|A|1597
6S47|1|BA|U|1598
6S47|1|BA|C|1599
6S47|1|BA|A|1600
6S47|1|BA|G|1601
6S47|1|BA|C|1602

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BR

40S ribosomal protein S16-A

Chain BU

40S ribosomal protein S19-A

Chain BV

40S ribosomal protein S20

Chain Be

40S ribosomal protein S29-A