HL_6S47_114
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_114 not in the Motif Atlas
- Homologous match to HL_8P9A_186
- Geometric discrepancy: 0.0942
- The information below is about HL_8P9A_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6S47|1|AC|C|47
6S47|1|AC|A|48
6S47|1|AC|G|49
6S47|1|AC|C|50
6S47|1|AC|G|51
6S47|1|AC|A|52
6S47|1|AC|A|53
6S47|1|AC|A|54
6S47|1|AC|U|55
6S47|1|AC|G|56
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Al
- 60S ribosomal protein L37-A
- Chain An
- 60S ribosomal protein L39
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