HL_6S47_115

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_115 not in the Motif Atlas

Homologous match to HL_8C3A_219

Geometric discrepancy: 0.4881

The information below is about HL_8C3A_219

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

6S47|1|BA|A|1296
6S47|1|BA|G|1297
6S47|1|BA|U|1298
6S47|1|BA|G|1299
6S47|1|BA|A|1300
6S47|1|BA|U|1301

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BB

40S ribosomal protein S0-A

Chain BD

40S ribosomal protein S2