HL_6S47_117

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACAUAGU

Length

7 nucleotides

Bulged bases

6S47|1|AA|U|2501, 6S47|1|AA|A|2502

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|A|2443
6S47|1|AA|C|2444
6S47|1|AA|A|2445
6S47|1|AA|U|2501
6S47|1|AA|A|2502
6S47|1|AA|G|2503
6S47|1|AA|U|2504

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ak

60S ribosomal protein L36-A