HL_6SGB_004

3D structure

PDB id

6SGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assemblosome of Trypanosoma brucei

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAGUGCUGAUUUAACC

Length

19 nucleotides

Bulged bases

6SGB|1|CA|G|297, 6SGB|1|CA|C|298, 6SGB|1|CA|U|304, 6SGB|1|CA|A|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGB|1|CA|G|290
6SGB|1|CA|U|291
6SGB|1|CA|U|292
6SGB|1|CA|A|293
6SGB|1|CA|A|294
6SGB|1|CA|G|295
6SGB|1|CA|U|296
6SGB|1|CA|G|297
6SGB|1|CA|C|298
6SGB|1|CA|U|299
6SGB|1|CA|G|300
6SGB|1|CA|A|301
6SGB|1|CA|U|302
6SGB|1|CA|U|303
6SGB|1|CA|U|304
6SGB|1|CA|A|305
6SGB|1|CA|A|306
6SGB|1|CA|C|307
6SGB|1|CA|C|308

Current chains

Chain CA

9S rRNA

Nearby chains

Chain CF

bS6m

Chain CK

uS11m

Chain CO

uS15m

Chain CR

bS18m

Chain F7

mt-SAF7 (KRIPP10)

Chain FJ

mt-SAF18

Chain FY

mt-SAF28

Chain Fa

mt-SAF30

Chain Fd

mt-SAF33