HL_6SKG_027

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCAUCAUC

Length

9 nucleotides

Bulged bases

6SKG|1|Aa|C|1311, 6SKG|1|Aa|U|1316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|1309
6SKG|1|Aa|U|1310
6SKG|1|Aa|C|1311
6SKG|1|Aa|A|1312
6SKG|1|Aa|U|1313
6SKG|1|Aa|C|1314
6SKG|1|Aa|A|1315
6SKG|1|Aa|U|1316
6SKG|1|Aa|C|1317

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Ar

30S ribosomal protein S14 type Z

Chain Av

30S ribosomal protein S19e