HL_6SKG_032

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACCUC

Length

6 nucleotides

Bulged bases

6SKG|1|BA|U|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_032 not in the Motif Atlas

Homologous match to HL_4V9F_003

Geometric discrepancy: 0.3215

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6SKG|1|BA|G|131
6SKG|1|BA|A|132
6SKG|1|BA|C|133
6SKG|1|BA|C|134
6SKG|1|BA|U|135
6SKG|1|BA|C|136

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L23

Chain Bh

50S ribosomal protein L37e

Chain Bi

50S ribosomal protein L39e