HL_6SKG_046

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKG_046 not in the Motif Atlas

Homologous match to HL_4V9F_017

Geometric discrepancy: 0.1122

The information below is about HL_4V9F_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SKG|1|BA|G|611
6SKG|1|BA|G|612
6SKG|1|BA|C|613
6SKG|1|BA|G|614
6SKG|1|BA|A|615
6SKG|1|BA|C|616

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L14e

Chain BT

50S ribosomal protein L18Ae

Chain Bf

Ribosomal protein eL35A

Chain Bm

30S ribosomal protein S17e